Hi


I had to revert back to MySQL 5.7 because after the migration to MariaDB 10.9 there were gaps in all graphs and the db.log grew even faster.

The output of SHOW ENGINE INNODB STATUS is

---

| InnoDB |      |
=====================================
2022-11-07 10:09:12 0x7f4f36c15700 INNODB MONITOR OUTPUT
=====================================
Per second averages calculated from the last 46 seconds
-----------------
BACKGROUND THREAD
-----------------
srv_master_thread loops: 124709 srv_active, 0 srv_shutdown, 113 srv_idle
srv_master_thread log flush and writes: 124822
----------
SEMAPHORES
----------
OS WAIT ARRAY INFO: reservation count 47713509
OS WAIT ARRAY INFO: signal count 28518767
RW-shared spins 0, rounds 42974568, OS waits 15164860
RW-excl spins 0, rounds 772630515, OS waits 25383658
RW-sx spins 145522, rounds 3008088, OS waits 73966
Spin rounds per wait: 42974568.00 RW-shared, 772630515.00 RW-excl, 20.67 RW-sx
------------------------
LATEST DETECTED DEADLOCK
------------------------
2022-11-07 10:02:02 0x7f4f36ffd700
*** (1) TRANSACTION:
TRANSACTION 10874120207, ACTIVE 2 sec inserting
mysql tables in use 1, locked 1
LOCK WAIT 4 lock struct(s), heap size 1136, 3 row lock(s), undo log entries 2
MySQL thread id 182879, OS thread handle 139978201470720, query id 12635343 localhost observium update
INSERT INTO `vlans_fdb` (`fdb_id`,`port_id`,`fdb_status`,`fdb_port`,`fdb_last_change`,`deleted`)  VALUES ('2025238686','20594','learned','1','1667811720','0'),('2025237413','20594','learned','1','1667811720','0'),('2013955508','20594','learned','1','1667811720','0'),('2013923178','20594','learned','1','1667811720','0'),('2013955509','20594','learned','1','1667811720','0'),('2025274310','20594','learned','1','1667811720','0'),('2025238687','20594','learned','1','1667811720','0'),('2025237415','20594','learned','1','1667811720','0'),('2013955513','20594','learned','1','1667811720','0'),('2025237417','20594','learned','1','1667811720','0'),('2025237810','20594','learned','1','1667811720','0'),('2025237811','20594','learned','1','1667811720','0'),('2025366168','20594','learned','1','1667811720','0'),('2013946482','20594','learned','1','1667811720','0'),('2025237555','20594','learned','1','1667811720','0'),('201
*** (1) WAITING FOR THIS LOCK TO BE GRANTED:
RECORD LOCKS space id 445 page no 444 n bits 232 index PRIMARY of table `observium`.`vlans_fdb` trx id 10874120207 lock_mode X locks rec but not gap waiting
Record lock, heap no 119
*** (2) TRANSACTION:
TRANSACTION 10874117802, ACTIVE 50 sec fetching rows
mysql tables in use 1, locked 1
13881 lock struct(s), heap size 1564880, 2997140 row lock(s), undo log entries 26489
MySQL thread id 182763, OS thread handle 139978201880320, query id 12628154 localhost observium updating
UPDATE `vlans_fdb` set `fdb_last_change` ='1667811670',`deleted` ='1' WHERE  `fdb_id` IN ('1132864756','1132865043','1132865062','1631027935','1631028133','1631028144','1888392483','1915282828','1923857809','1930092869','1961020401','1967185692','1973487378','1979780642','1983023977','1985730343','1996508399','1998944659','2002767001','2010955906','2011067506','2011299640','2012864129','2017460185','2020769901','2021848541','2021886167','2021902147','2021975479','2021975515','2021986152','2021986155','2021986156','2022000628','2022000657','2022000680','2022028046','2022028049','2022028079','2022051129','2022051139','2022064486','2022140079','2022171797','2022201998','2022217108','2022217117','2022217120','2022235472','2022235512','2022248245','2022248259','2022276664','2022288724','2022288751','2022299179','2022299181','2022307491','2022307511','2022319006','2022329260','2022329268','2022329300','20223293
*** (2) HOLDS THE LOCK(S):
RECORD LOCKS space id 445 page no 444 n bits 232 index PRIMARY of table `observium`.`vlans_fdb` trx id 10874117802 lock_mode X
Record lock, heap no 1
Record lock, heap no 2
Record lock, heap no 6
Record lock, heap no 7
Record lock, heap no 8
Record lock, heap no 9
Record lock, heap no 10
Record lock, heap no 11
Record lock, heap no 12
Record lock, heap no 13
Record lock, heap no 14
Record lock, heap no 15
Record lock, heap no 16
Record lock, heap no 17
Record lock, heap no 18
Record lock, heap no 19
Record lock, heap no 21
Record lock, heap no 22
Record lock, heap no 27
Record lock, heap no 28
Record lock, heap no 29
Record lock, heap no 31
Record lock, heap no 33
Record lock, heap no 34
Record lock, heap no 37
Record lock, heap no 39
Record lock, heap no 40
Record lock, heap no 41
Record lock, heap no 42
Record lock, heap no 43
Record lock, heap no 44
Record lock, heap no 45
Record lock, heap no 46
Record lock, heap no 47
Record lock, heap no 48
Record lock, heap no 49
Record lock, heap no 50
Record lock, heap no 51
Record lock, heap no 52
Record lock, heap no 53
Record lock, heap no 54
Record lock, heap no 55
Record lock, heap no 56
Record lock, heap no 57
Record lock, heap no 58
Record lock, heap no 59
Record lock, heap no 60
Record lock, heap no 62
Record lock, heap no 67
Record lock, heap no 68
Record lock, heap no 69
Record lock, heap no 70
Record lock, heap no 72
Record lock, heap no 73
Record lock, heap no 75
Record lock, heap no 76
Record lock, heap no 77
Record lock, heap no 79
Record lock, heap no 81
Record lock, heap no 82
Record lock, heap no 84
Record lock, heap no 86
Record lock, heap no 88
Record lock, heap no 91
Record lock, heap no 92
Record lock, heap no 93
Record lock, heap no 94
Record lock, heap no 95
Record lock, heap no 96
Record lock, heap no 97
Record lock, heap no 98
Record lock, heap no 99
Record lock, heap no 100
Record lock, heap no 101
Record lock, heap no 102
Record lock, heap no 103
Record lock, heap no 104
Record lock, heap no 105
Record lock, heap no 106
Record lock, heap no 107
Record lock, heap no 108
Record lock, heap no 109
Record lock, heap no 110
Record lock, heap no 111
Record lock, heap no 112
Record lock, heap no 113
Record lock, heap no 114
Record lock, heap no 116
Record lock, heap no 117
Record lock, heap no 118
Record lock, heap no 119
Record lock, heap no 122
Record lock, heap no 123
Record lock, heap no 125
Record lock, heap no 126
Record lock, heap no 127
Record lock, heap no 128
Record lock, heap no 129
Record lock, heap no 130
Record lock, heap no 132
Record lock, heap no 134
Record lock, heap no 135
Record lock, heap no 136
Record lock, heap no 137
Record lock, heap no 138
Record lock, heap no 139
Record lock, heap no 140
Record lock, heap no 141
Record lock, heap no 143
Record lock, heap no 144
Record lock, heap no 146
Record lock, heap no 148
Record lock, heap no 149
Record lock, heap no 150
Record lock, heap no 151
Record lock, heap no 152
Record lock, heap no 154
Record lock, heap no 155
Record lock, heap no 156
Record lock, heap no 157
Record lock, heap no 158
Record lock, heap no 159
Record lock, heap no 160
Record lock, heap no 161
*** (2) WAITING FOR THIS LOCK TO BE GRANTED:
RECORD LOCKS space id 445 page no 37010 n bits 304 index PRIMARY of table `observium`.`vlans_fdb` trx id 10874117802 lock_mode X waiting
Record lock, heap no 228 PHYSICAL RECORD: n_fields 11; compact format; info bits 0
 0: len 8; hex 0000000078b6aba5; asc     x   ;;
 1: len 6; hex 00028825e80f; asc    %  ;;
 2: len 7; hex 4b0001802f0168; asc K   / h;;
 3: len 4; hex 800001d3; asc     ;;
 4: len 4; hex 80000001; asc     ;;
 5: len 4; hex 80005072; asc   Pr;;
 6: len 12; hex 303035303536386233326366; asc 0050568b32cf;;
 7: len 7; hex 6c6561726e6564; asc learned;;
 8: len 1; hex 31; asc 1;;
 9: len 4; hex 6368c988; asc ch  ;;
 10: len 1; hex 80; asc  ;;

*** WE ROLL BACK TRANSACTION (1)
------------
TRANSACTIONS
------------
Trx id counter 10874142190
Purge done for trx's n:o < 10874142190 undo n:o < 0 state: running but idle
History list length 24
LIST OF TRANSACTIONS FOR EACH SESSION:
---TRANSACTION 421454604985288, not started
0 lock struct(s), heap size 1136, 0 row lock(s)
--------
FILE I/O
--------
I/O thread 0 state: waiting for completed aio requests (insert buffer thread)
I/O thread 1 state: waiting for completed aio requests (log thread)
I/O thread 2 state: waiting for completed aio requests (read thread)
I/O thread 3 state: waiting for completed aio requests (read thread)
I/O thread 4 state: waiting for completed aio requests (read thread)
I/O thread 5 state: waiting for completed aio requests (read thread)
I/O thread 6 state: waiting for completed aio requests (write thread)
I/O thread 7 state: waiting for completed aio requests (write thread)
I/O thread 8 state: waiting for completed aio requests (write thread)
I/O thread 9 state: waiting for completed aio requests (write thread)
Pending normal aio reads: [0, 0, 0, 0] , aio writes: [0, 0, 0, 0] ,
 ibuf aio reads:, log i/o's:, sync i/o's:
Pending flushes (fsync) log: 0; buffer pool: 0
606216106 OS file reads, 233093249 OS file writes, 12204091 OS fsyncs
2.87 reads/s, 16384 avg bytes/read, 7.83 writes/s, 1.35 fsyncs/s
-------------------------------------
INSERT BUFFER AND ADAPTIVE HASH INDEX
-------------------------------------
Ibuf: size 1, free list len 2049, seg size 2051, 1245230 merges
merged operations:
 insert 2651601, delete mark 2727628, delete 1803645
discarded operations:
 insert 0, delete mark 0, delete 0
Hash table size 34673, node heap has 7 buffer(s)
Hash table size 34673, node heap has 5 buffer(s)
Hash table size 34673, node heap has 8 buffer(s)
Hash table size 34673, node heap has 7 buffer(s)
Hash table size 34673, node heap has 589 buffer(s)
Hash table size 34673, node heap has 1 buffer(s)
Hash table size 34673, node heap has 1 buffer(s)
Hash table size 34673, node heap has 12 buffer(s)
111.89 hash searches/s, 379.14 non-hash searches/s
---
LOG
---
Log sequence number 16121562031966
Log flushed up to   16121562031966
Pages flushed up to 16121562031966
Last checkpoint at  16121562031957
0 pending log flushes, 0 pending chkp writes
2322618 log i/o's done, 0.80 log i/o's/second
----------------------
BUFFER POOL AND MEMORY
----------------------
Total large memory allocated 137428992
Dictionary memory allocated 926486
Buffer pool size   8191
Free buffers       1024
Database pages     6537
Old database pages 2393
Modified db pages  0
Pending reads      0
Pending writes: LRU 0, flush list 0, single page 0
Pages made young 75025021, not young 63229816352
0.00 youngs/s, 0.00 non-youngs/s
Pages read 606227143, created 2007805, written 224193059
0.00 reads/s, 0.00 creates/s, 0.00 writes/s
Buffer pool hit rate 998 / 1000, young-making rate 0 / 1000 not 9 / 1000
Pages read ahead 0.00/s, evicted without access 0.00/s, Random read ahead 0.00/s
LRU len: 6537, unzip_LRU len: 0
I/O sum[414]:cur[0], unzip sum[0]:cur[0]
--------------
ROW OPERATIONS
--------------
0 queries inside InnoDB, 0 queries in queue
0 read views open inside InnoDB
Process ID=27475, Main thread ID=139979239032576, state: sleeping
Number of rows inserted 198328, updated 761940298, deleted 192787, read 87443142380
1.11 inserts/s, 2.67 updates/s, 0.09 deletes/s, 1361.95 reads/s
----------------------------
END OF INNODB MONITOR OUTPUT
============================

---

Am 04.11.2022 um 12:52 schrieb Adam Armstrong via observium:

Do you have the output of “SHOW ENGINE INNODB STATUS”?

 

The docs say you can also get more information if you enable innodb print all deadlocks and then look in the mysql.err after a deadlock has occurred.

 

Adam.

 

From: Thomas Stather via observium <observium@lists.observium.org>
Sent: 04 November 2022 11:19
To: observium@lists.observium.org
Cc: Thomas Stather <tstather@mr.mpg.de>
Subject: [Observium] Re: Lots of errors "Deadlock found when trying to get

 

Hi

 

This happens on INSERT and UPDATE queries since today i had

 

[2022/11/04 12:05:53 +0100] poller.php(3430): Failed dbQuery (#1205 - Lock wait timeout exceeded; try restarting transaction), Query: UPDATE `vlans_fdb` set `fdb_last_change` ='1667559900',`deleted` ='1' WHERE  `fdb_id` IN ('20...... <lots of output in the log>

 

 

I just migrated from MySQL 5.7 to MariaDB 10.9 but this didn't solve the issue

 

 

Best,

Thomas

 

Am 04.11.2022 um 02:20 schrieb Adam Armstrong via observium:

This seems to be an issue with the number of updates we do on large vlan installations. It's not entirely clear to me why it's happening, so not really sure how to fix it.

MySQL behaves oddly at times. We do an insert with a clause to update when primary key exists, which might well be why it's behaving oddly. I think if we tried to remove that and do it another way, it would be much slower.

I saw some solutions involving query ordering, but I couldn't see how that would affect us.

I wonder if this happens only when both an insert and an update occur on the same query?

adam.

Milton Ngan via observium wrote on 2022-10-28 10:03:

Try out some of the diagnostic steps here. Is it always the vlans_fdb table? You can probably turn off polling that data for now so polling keeps working. 

 

https://dev.mysql.com/doc/refman/5.6/en/innodb-deadlocks-handling.html

 

·         At any time, issue SHOW ENGINE INNODB STATUS to determine the cause of the most recent deadlock. That can help you to tune your application to avoid deadlocks.

·         If frequent deadlock warnings cause concern, collect more extensive debugging information by enabling the innodb_print_all_deadlocks variable. Information about each deadlock, not just the latest one, is recorded in the MySQL error log. Disable this option when you are finished debugging.


From: Thomas Stather via observium <observium@lists.observium.org>
Sent: Friday, October 28, 2022 12:53:01 AM
To: observium@observium.org
Cc: Adam Armstrong; Thomas Stather
Subject: [Observium] Re: Lots of errors "Deadlock found when trying to get

 

Hi


We have


207 devices (network, servers, ups etc.)

6709 ports

2841 sensors


The problem is still not fixed.


Best,

Thomas

Am 26.07.2022 um 23:49 schrieb Adam Armstrong via observium:

> You might want to provide information on how big the installation is and what sort of devices are involved.
>
> But I'd try upgrading to a newer distribution. Newer MySQL/MariaDB may behave better.
>
> Adam.
>
> -----Original Message-----
> From: observium <observium-bounces@observium.org> On Behalf Of Thomas Stather via observium
> Sent: 26 July 2022 08:42
> To: 'Observium' <observium@observium.org>
> Cc: Thomas Stather <tstather@mr.mpg.de>
> Subject: [Observium] Lots of errors "Deadlock found when trying to get lock; try restarting transaction"
>
> Hi
>
> We are running Observium Professional r12071
>
> OS: Ubuntu 18.04 LTS
>
> MySQL: 5.7.38-0ubuntu0.18.04.1
>
>
> In our /opt/observium/logs/db log, we are seeing a lot of these messages (approx. every minute).
>
> ---
>
> [2022/07/26 09:23:54 +0200] poller.php(3889): Failed dbQuery (#1213 - Deadlock found when trying to get lock; try restarting transaction),
> Query: INSERT INTO `vlans_fdb`
> (`fdb_id`,`port_id`,`fdb_status`,`fdb_port`,`fdb_last_change`,`deleted`)
> VALUES
> 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> ON DUPLICATE KEY UPDATE
> `fdb_id`=VALUES(`fdb_id`),`port_id`=VALUES(`port_id`),`fdb_status`=VALUES(`fdb_status`),`fdb_port`=VALUES(`fdb_port`),`fdb_last_change`=VALUES(`fdb_last_change`),`deleted`=VALUES(`deleted`)
>
> ---
>
>
> Does somebody have a clue how this can be fixed?
>
> Best,
>
> Thomas
>
> --
> Thomas Stather
> IT Services
>
> VCP4, VCP6-DCV, VCP6.5-DCV
>
> Tel: +49 6221 486 628
> Fax: +49 6221 486 561
>
> Bevor Sie diese Mail ausdrucken, prüfen Sie bitte ob dies wirklich nötig ist. Umweltschutz geht uns alle an!
>
> _______________________________________________
> observium mailing list
> observium@observium.org
> http://postman.memetic.org/cgi-bin/mailman/listinfo/observium
>
> _______________________________________________
> observium mailing list
> observium@observium.org
> http://postman.memetic.org/cgi-bin/mailman/listinfo/observium

--
Thomas Stather
IT Services

VCP4, VCP6-DCV, VCP6.5-DCV

Room: U1.509
Tel: +49 6221 486 628
Fax: +49 6221 486 561

Bevor Sie diese Mail ausdrucken, prüfen Sie bitte ob dies wirklich nötig ist. Umweltschutz geht uns alle an!

_______________________________________________
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To unsubscribe send an email to observium-leave@lists.observium.org




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To unsubscribe send an email to observium-leave@lists.observium.org

 

--

Sent from Postbox



_______________________________________________
observium mailing list -- observium@lists.observium.org
To unsubscribe send an email to observium-leave@lists.observium.org
-- 
Thomas Stather
IT Services
 
VCP4, VCP6-DCV, VCP6.5-DCV
 
Room: U1.509
Tel: +49 6221 486 628
Fax: +49 6221 486 561
 
Bevor Sie diese Mail ausdrucken, prüfen Sie bitte ob dies wirklich nötig ist. Umweltschutz geht uns alle an!

_______________________________________________
observium mailing list -- observium@lists.observium.org
To unsubscribe send an email to observium-leave@lists.observium.org
-- 
Thomas Stather
IT Services

VCP4, VCP6-DCV, VCP6.5-DCV

Room: U1.509
Tel: +49 6221 486 628
Fax: +49 6221 486 561

Bevor Sie diese Mail ausdrucken, prüfen Sie bitte ob dies wirklich nötig ist. Umweltschutz geht uns alle an!